Downloads page
Here is the main downloads page. New software and pre-processed knockoff data will be released here.
Software
| Operating System | v0.2.4 (April 21, 2024) |
|---|---|
| Linux 64-bit | Download |
After unzipping, the executable will be located inside bin/GhostKnockoffGWAS. We recommend adding the folder containing the GhostKnockoffGWAS executable to PATH for easier access.
Pre-processed LD files
We welcome solveblock users to upload its output to the cloud and share the download link with us.
| Population | Link | Number of samples | Number of blocks | How were blocks defined | HG Build | Citation |
|---|---|---|---|---|---|---|
| **EUR (British in UK-Biobank) | download | 306604 | 636 | Computed with snp_ldsplit | 19 | |
| **EUR (Europeans from Pan-UKB) | download | See * | 1703 | Adapted from ldetect | 19 and 38 | paper |
| IND (Indians in UK-Biobank) | download | 5951 | 615 | Computed with snp_ldsplit | 19 | |
| CRB (Caribbeans in UK-Biobank) | download | 4517 | 489 | Computed with snp_ldsplit | 19 | |
| AFR (Africans in UK-Biobank) | download | 3394 | 513 | Computed with snp_ldsplit | 19 | |
| CHN (Chinese in UK-Biobank) | download | 1574 | 505 | Computed with snp_ldsplit | 19 |
*: This file contain pre-processed LD files generated from the typed SNPs of the EUR cohort from the Pan-UKB panel.
**: The difference between the 2 EUR panels mainly resides in how the quasi-independent blocks are computed. All else being equal, the first entry, EUR (British in UK-Biobank), should be preferred. Their main difference is that the in the first, we compute the independent blocks using snp_ldsplit directly on the UK-Biobank British samples. The second one used quasi-independent blocks from LDetect computed on the 1000 genomes project. These block boundaries should be less accurate due to significantly fewer samples.