fastPHASE.jl

fastPHASE.jl is a Julia wrapper of the popular fastPHASE genetics program, designed for haplotype reconstruction and estimating missing genotypes from population data.

The methodology is described in the following paper

Scheet, P and Stephens, M (2006). A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet. https://doi.org/10.1086/502802