Softwares

Published:

Published:

Below are softwares I am involved in, that I think are pretty cool.

MendelIHT.jl

Iterative hard thresholding as a multiple regression model for GWAS

GitHub page

Documentation

MendelImpute.jl

Fast genotype imputation, phasing, and admixture estimation

GitHub page

Documentation

SnpArrays.jl

Julia utilities for handling binary PLINK files

GitHub page

Documentation

VCFTools.jl

Julia utilities for handling VCF files

GitHub page

Documentation

MendelKinship.jl

Julia utilities for computing theoretical/empirical kinship and other identity coefficients

GitHub page

Documentation

Thyrosim.jl

Mechanistic model for thyroid hormone regulation

GitHub page

Knockoffs.jl

Julia implementation of the Knockoff filter

GitHub page